Archaeopteryx requires at least Java 1.5 (also called Java 5). To determine which version of Java your web browser is using, please visit
[javatester] or [java.com].
Java is available for download at
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| Apaf-1 (domains) | Tree represented by data in phyloXML format. See input data here. |
| Bcl-2 | Tree represented by data in phyloXML format. See input data here. |
| Apaf-1 & Bcl-2 (tabbed display) | Tree represented by data in phyloXML format. See input data here. |
| Mollusk taxonomy | Mollusca from the NCBI taxonomy (5632 external nodes) in phyloXML format. Download input data here (this is a zip file, from which Archaeopteryx extracts one phyloXML formatted entry). Due to the limited amount of default memory allocated for Java applets, a "Java heap space error" might occur. To correct this, increase the Java applet memory limit with the -Xmx command line option, as described here. |
| Cnidaria from ToL project | Cnidarian phylogeny from the Tree of Life project. This has been converted from the ToL Response XML format to phyloXML. Download input data here. Download the original data here (Archaeopteryx can read the ToL Response XML format). |
| A colored phylogeny | Tree with species and branch coloring. See input data here (phyloXML). |
| Variable branch widths | Tree with variable branch widths. See input data here (phyloXML). |
Last updated 2009.08.21