ATV is a Java tool based on the FORESTER libaries for the visualization of annotated phylogenetic trees. It can be used both as an applet and as a standalone application. It requires Java version 1.6 or higher.
Latest version: ATV 4.00 ALPHA 13 (2008.04.28)
jar file containing ATV: » forester.jar
example configuration file: » _atv_configuration_file
previous versions
Clicking on the "forester.jar" file should start it, the configuration file ("_atv_configuration_file") will be used if it is in the same directory as the jar file.
command line (without use of a configuration file or "_atv_configuration_file" is in the same direcotory as the jar file):
java -cp path/to/forester.jar org.forester.atv.ATV
command line (using a configuration file anywhere in the file system):
java -cp path/to/forester.jar org.forester.atv.ATV -c path/to/_atv_configuration_file
ATV applet examples (version 4.00 ALPHA 9) (requires Java 1.6 or higher)
ATV (as application/module of the the open source FORESTER libraries) is also available
via SourceForge.
Project name: FORESTER/ATV
http://sourceforge.net/projects/forester-atv/
Zmasek C.M. and Eddy S.R. (2001) ATV: display and manipulation of annotated phylogenetic trees. Bioinformatics, 17, 383-384. [PubMed] [Bioinformatics] [Google Scholar]
Christian M Zmasek | Burnham Institute for Medical Research | cmzmasek yahoo com
Ethalinda Cannon | University of Minnesota | canno073 umn edu
Last updated 2008.04.23