#Tree display options: # name: display/nodisplay yes/no #Note: if an option is not displayed, it will not be enabled use_real_br_lengths: display yes color_according_to_species: display yes show_node_names: display yes show_node_ids display yes show_gene_names display yes show_sequence_acc display yes show_taxonomy: display yes show_annotations display no write_br_length_values: display no write_bootstrap_values: display no write_dup_spec: display yes color_branches: display no width_branches: nodisplay no color_orthologous: nodisplay no color_subtree_neighbors: nodisplay no color_super_orthologous: nodisplay no show_domain_architectures: display no show_binary_characters display no show_binary_character_counts display no mark_nodes_with_box: display no display_internal_data display yes #Possible click-to options: # name: display/nodisplay click_to: edit_info display click_to: collapse_uncollapse display click_to: reroot display click_to: subtree display click_to: swap display click_to: display_sequences display click_to: go_to_swiss_prot nodisplay #Note: applet only click_to: display_node_popup nodisplay #Note: applet only; will be set to nodisplay if no pop information click_to: display_glyph_popup nodisplay #Note: will be set to nodisplay if glyph type is "none" #Default click-to option (any of the above if set to "display") default_click_to: edit_info # Node and sequence popup information (blank if no popup URL) node_popup_title: "Get map" node_popup_URL: http://solevol.ccgb.umn.edu/GeneInfo.php?name= sequence_popup_URL: http://solevol.ccgb.umn.edu/GeneInfo.php?name= #Glyph panel options # possible options: none, expression, chromosome glyph_type: none #OPTIONAL #Species colors: # species_color: speciesname hexcolor species_color: BRAFL 0x00FFFF species_color: SPHGR 0x9620F0 species_color: STRPU 0x9620F0 species_color: CIOIN 0xFF1CAE species_color: BOVIN 0x5C3317 species_color: CANFA 0x8B2323 species_color: HUMAN 0xFF2400 species_color: MOUSE 0xFF7F00 species_color: XENLA 0x6BAA23 species_color: XENTR 0x6BAA23 species_color: CHICK 0xFFC125 species_color: FUGRU 0x0000FF species_color: BRARE 0x000080 species_color: TETNG 0x38B0DE species_color: CAEEL 0xA0A0A0 species_color: CAEE 0xA0A0A0 species_color: CAEBR 0xB0B0B0 species_color: DROME 0x444200 species_color: DROPS 0x605F00 species_color: APIME 0x7A7700 species_color: AEDAE 0x8C5900 species_color: TRICA 0x918E00 species_color: NEMVE 0xAABADD species_color: HYDAT 0x7C9BCF species_color: LUBBA 0xF7B5CB species_color: GEOCY 0xF5A0BD species_color: SUBDO 0xC790B9 #Domain colors: domain_color: TIR 0x900000 domain_color: NACHT 0x000000 domain_color: CARD 0xFF0000 domain_color: Peptidase_C14 0x00FF00 domain_color: Death 0x0000FF domain_color: DED 0x00FFFF domain_color: BIR 0xCCFF33 domain_color: PAAD_DAPIN 0x9999CC domain_color: NB-ARC 0x500050 domain_color: WD40 0x888888 domain_color: RVT_1 0x999900 domain_color: NOPS 0x505000 domain_color: RRM_1 0x004400 domain_color: fn3 0xFFCC00 domain_color: Ank 0xCC33FF domain_color: Pkinase 0x339900 domain_color: Pkinase_Tyr 0x336600 domain_color: ig 0x660066 domain_color: zf-C3HC4 0x6699FF domain_color: zf-CCHC 0x6699EE domain_color: zf-C2H2 0x6699CC domain_color: zf-B_box 0x6699DD domain_color: PDZ 0x66FFCC domain_color: SH3_2 0x996600 domain_color: MIRO 0xCCFF00 domain_color: Myb_DNA-binding 0xDDDDDD domain_color: NHL 0x336666 domain_color: PKD_channel 0x336666 domain_color: Ion_trans 0x996666 domain_color: CAP_GLY 0xCC9900 domain_color: LRR_1 0xFFFF99 domain_color: LRR_2 0xFFFF66 domain_color: LRR_3 0xFFFF33 domain_color: LRR_adjacent 0xFFFF00 domain_color: LRRCT 0xFFCC99 domain_color: LRRNT 0xFFCC66 domain_color: LRRNT_2 0xFFCC33 domain_color: Ank 0x990099 domain_color: Sushi 0x004400 domain_color: ZU5 0xFF9999 domain_color: V-set 0x3399FF domain_color: TPR_1 0xFF1493 domain_color: TPR_2 0xFF69B4 domain_color: TPR_3 0xCD6090 domain_color: TPR_4 0xFF6A6A domain_color: TPR_MLP1_2 0x33FF00 domain_color: Collagen 0xFF7F00 domain_color: MIF 0xADD8E6 #Function colors: function_color: a_function 0x1244FF function_color: b_function 0xAA1295 function_color: c_function 0x103953 function_color: dehydrogenase 0x0000FF function_color: kinase 0xFF00FF function_color: protease 0x009900 function_color: transcription 0xAAAA00 function_color: pro_apoptotic 0xFF00FF function_color: anti_apoptotic 0x000000