Christian M Zmasek :: Publications

Zmasek C.M., Qing Z., Ye Y., and Godzik A. (2007).
Surprising complexity of the ancestral apoptosis network.
Genome Biology, 8:R226.
[PubMed] [Genome Biology] [PDF]

Leebens-Mack J., Vision T., ..., and Zmasek C. (2006).
Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA).
OMICS, 10:231-237.
[PubMed] [OMICS] [PDF] [Google Scholar]

Lawrence C.J., Zmasek C.M., Kelly Dawe R., and Malmberg R.L. (2004).
LumberJack: a heuristic tool for sequence alignment exploration and phylogenetic inference.
Bioinformatics, 20, 1977-1979.
[PubMed] [Bioinformatics] [PDF] [software available at http://www.plantbio.uga.edu/~russell/software.html]

Zmasek C.M. and Eddy S.R. (2002).
RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs.
BMC Bioinformatics, 3:14.
[PubMed] [BMC Bioinformatics] [PDF] [webserver at http://rio.janelia.org/] [software available at http://www.phylosoft.org/forester/] [Google Scholar]

Zmasek C.M. and Eddy S.R. (2001).
A simple algorithm to infer gene duplication and speciation events on a gene tree.
Bioinformatics, 17, 821-828.
[PubMed] [Bioinformatics] [PDF] [software available at http://www.phylosoft.org/forester/] [Google Scholar]

Zmasek C.M. and Eddy S.R. (2001).
ATV: display and manipulation of annotated phylogenetic trees.
Bioinformatics, 17, 383-384.
[PubMed] [Bioinformatics] [PDF] [software available at http://www.phylosoft.org/atv/] [Google Scholar]

Hurov J.B., Stappenbeck T.S., Zmasek C.M., White L.S., Ranganath S.H., Russell J.H., Chan A.C., Murphy K.M., and Piwnica-Worms H. (2001).
Immune system dysfunction and autoimmune disease in mice lacking Emk (Par-1) protein kinase.
Molecular and Cellular Biology, 21, 3206-3219.
[PubMed] [Molecular and Cellular Biology] [PDF] [Google Scholar]

Springer C., Krappmann S., Künzler M., Zmasek C., and Braus G.H. (1997).
Activation of the HIS7 gene by the global transcription factor Abf1p.
Molecular and General Genetics, 256, 136-146.
[PubMed] [Molecular and General Genetics] [PDF] [Google Scholar]

Last updated 2007.10.29