Software for Evolutionary Biology Research

This site provides information about software based on the open source Forester libraries. The applications are implemented in Java, Ruby, and Perl and are available for download through their respective sites as well as through Source Forge.

ATV | A Tree Viewer

A Java application and applet for viewing phylogenetic trees.

Forester

Open source libraries of Java, Ruby, and Perl software for phylogenomics and evolutionary biology research

RIO | Resampled Inference of Orthologs

phyloXML

An XML language for describing annotated phylogenetic trees and networks. Currently under development.

fluorite

A visualization package (under development).

Contacts

Christian M Zmasek
Burnham Institute for Medical Research